ngff

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

A napari plugin for zarr backed OME-NGFF images

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

KiCad Library for m.2 NGFF card

Browse, share, and publish OME-Zarr data

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

Advanced methods in bioimage analysis

Document available viewers and other tools for the OME-NGFF image format

Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.

Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023

People that have contributed to OME-Zarr at some point

Training website for the OME-Zarr format and the tooling around it.

A catalog of all public OME-NGFF representative samples derived from IDR data

Inspector for NGFF-style containers supported by the N5 API (N5, HDF5, OME-Zarr)

NGFF

Ideas for supporting OME / OME-Zarr in the context of GerBI