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refget
Here are 6 public repositories matching this topic...
GA4GH refget Sequences v2.0.0 and Sequence Collections v1.0.0 — server, client, and CLI tools in Rust
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Aug 25, 2026 - Rust
A convention-safe genome-variant kernel: normalization + VCF/HGVS/VRS boundaries + liftover, validated byte-for-byte against bcftools, vrs-python, and biocommons hgvs.
rust bioinformatics genomics mutation-testing liftover vcf variant-calling ga4gh formal-verification vrs hgvs differential-testing tla-plus variant-normalization refget ga4gh-vrs sequence-variants
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Aug 13, 2026 - Rust
RefCompat checks whether genomic references, variants, alignments, annotations, and derived resources share a compatible reference-coordinate context using GA4GH refget/SeqCol identity and evidence-backed compatibility reasoning.
python bioinformatics genomics genome gff3 data-validation vcf interoperability fasta gtf bam ga4gh genome-assembly variant-analysis reference-genome cram genomic-data refget compatibility-checker seqcol
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Sep 1, 2026 - Python
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