tabix

Tabix.io UI

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

Tabix reader written 100% in Python

docker-compose for tabix, clickhouse-server and mariadb

Sample Clickhouse cluster deployment with chproxy

GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, di…

A nodejs-based service for requests for tabix-indexed genomic data

tabix.io Backend

Community builds for the main bioinformatics software - Samtools, Tabix, Bcftools, CD-HIT

MCP Connector for VCF Genetic Data File(s). Single, multiple, comparison, data setting, etc.

Historical archive: old tabix fork for Windows support for pysam-era workflows. Not maintained; use upstream htslib.

SQL projects

Tabix (nginx based) docker image

echoverse module: Tabix indexing and querying.

Works completed within the SQL module of the Data Analyst course on the Karpov Courses platform

Turn a VCF file into a running GA4GH Beacon v2 REST API, with no database and no ingestion step

Bitemporal evidence timeline for reported genetic variants: reconstructs what ClinVar asserted on any past date and reports what has moved since. Range-queried ingest, multi-tenant isolation enforced by an AST guard, tamper-evident review ledger. Research use only.

Make fast and memory efficient BED file queries, summaries, and matrices.